Update for SoyKB data
added a catch for chromosomes with names like '00'.  Convert name to '0'
added check for chromosome names like '00' to be converted to 0
added additional messages to log; added a fix for regex substitutions on strings longer than 1G -- need to plit and process in chunks or hit an internal limit in perl for tracking position in strings
added code to fix perl's regex from crashing on strings longer than 1G in length.
Minor change to log text
Merge branch 'master' of github.com:LyonsLab/coge