test adding an empty file in travel depth submodule


Former-commit-id: f87fa932a46bed97114674ba3cccc2d35067ac4f
make surface_travel_depth part of mindboggle rather than a submodule for now for ease of development


Former-commit-id: cc84d7dcc81c55e017225d21491e13d35d99e00c
removed .gitmodules


Former-commit-id: 00dd2fb325cc6eb5f373c8a915d8edb1c8dd01ee
delete CMakeLists.txt.user during compilation


Former-commit-id: f94f55708b962f3e0b79f8b436caba6a02e556c4
minor bug fixing in libbasin and libfundi


Former-commit-id: 3bbebe2a90fdfff2fa151dac902767ef409872d7
minor bug fixing in libbasin and libfundi for filenames


Former-commit-id: d433858f7bf164d1e2cf0257b76c3e9612458004
changed pit extraction that now we search all local minimum within each sulcus rather than stopping at a threshold


Former-commit-id: 11d80f3ce31781df97707c6410818fbc4dc01604
minor bug fixing in libfundi.py


Former-commit-id: 66cdc1dd76e25f47fed2dac9a0eac37ea0f67bfc
added a method to compute principal curvatures


Former-commit-id: cb5537a545004b74684f5ace189c31ad4d2f3dac
added script for mesh labeling from 21 atlases


Former-commit-id: 4314311fb985b9d4ef909da24857d0f9b1076737
Merge branch 'master' of github.com:binarybottle/mindboggle


Former-commit-id: c82ecb14590bca16e6050e870c5ba3cbb9373b76
label21.py added number of different and agreed labels for vertexes, respectively ; first push of seg_shape.py


Former-commit-id: 09902a6a0860b43e341c9f44ea49f32123e640a1
seg)shape.py first workable version finished


Former-commit-id: c7d1b9cd14be34224ce00d0855e25ad7bc77d782
updated laplace beltrami code


Former-commit-id: a6744795694d1097f5ed6d95351cafce345764ec
updated 21-atlases-to-patient labeling using MaxProb


Former-commit-id: 6a2efc75cc178e9106e377097129abfd7537681f
updated seg_shape.py: assign two nearest labels that are different from each other to fundus vertexes


Former-commit-id: af87600fdd75d6be68c472758d382d1042e64b06
separate segmentation and shape table generation into two files, seggment.py and shape_table.py from seg_shape.py


Former-commit-id: ae282e8548bb563a9aaff3156cefd349e28fe3ba
added the script to assign label pairs onto Yrjo s pits


Former-commit-id: bc1a914d612dc9d9624e14be070b15b7f2e0b74e
updated pits segmentation code for Yrjo


Former-commit-id: 73e0ed1b48e42f9bf1f58e4c8bc545a1e2e57843
updated segment_Yrjo.py to output up to 4 nearest labels and distances


Former-commit-id: 3ce92ccfc30c63abf0095504896b944ff7ce4e26