Starting to work on  comet in Scaffold - need to filter SQT
 BugzId: 3569
 Comet work packet automatically changes its parameters depending on what output file format the user wants.
 BugzId: 3569
 Comet by default produces .sqt files.
 BugzId: 3569
Merge pull request #28 from raymond301/master

First Quameter Update
rearranging JS code for performance
Removed a small tweak by Raymond.
Base page built with performance, broken filters and details graphs
Fixing unit tests.
Fixed details pages, added some more help pages.
Filtering Still Broken, need to hook Comments to backend.
Comet submits msconvert packet as a part of its work. The result is published next to the comet result.
Fixing the creation of the worker.
The SGE runner gets reference to the worker configuration (by service name), instead of fully serialized configuration object.
Log view does not crash when log does not exist yet.
Adding more help pages, stuck trying to get annotation/comments to work.
Merge branch 'master' of https://github.com/romanzenka/swift

Conflicts:
	swift/web/src/main/webapp/quameter/index.jsp