[maven-release-plugin] prepare release annotare2-0.22
[maven-release-plugin] prepare for next development iteration
Restored forgotten file storing routine
Removed generation of Scan object for sequencing submissions
Fixed NPE when file column has unassigned cells
Both one and two colour microarray experiment will have assays named after raw data files or raw data matrix files
Only assigned files will be validated and coped over to submission tracking
Added a configurable list of values for protocol hardware for sequencing submissions
Switched to new version of MageTabCheck 1.11
Reverted back to text editor column for protocol hardware
Switched to pre-release version of Limpopo and MageTabCheck for now
Fixed distorted IDF when some of experimental factors have no ontology terms associated
EF type = EF name if no term has been found
Updated year on all pages (to 2014); re-routed all app logging (including j.u.l to slf4j); added emailing if something goes wrong with subs tracking; fixed invalid commit if subs tracking tx was rolled back
Added error reporting of all RPC unexpected exceptions
Reworded popup message for successful submission and also for vailed validation
Changed contact roles delimiter to ";"
Switched to a limpopo 1.1.6 (released)
Merge branch 'develop' of github.com:arrayexpress/annotare2 into develop
Merge branch 'kolais' of github.com:arrayexpress/annotare2 into kolais