Added a bunch of stuff
Merged everything
Removed templates
More porting
Merge branch 'master' of github.com:joshua-decoder/jmtplz

Conflicts:
	joshua/Vocabulary.java
	joshua/phrase/decode/Coverage.java
	joshua/phrase/decode/Decode.java
	joshua/phrase/decode/PhraseTable.java
	joshua/phrase/decode/Scorer.java
	joshua/phrase/decode/StacksShared.java
	joshua/phrase/util/SlowHashMapVocabulary.java