added class that removes the temporary directories at start up
Refactored classes.
Fixed compilation error in test
Merge remote-tracking branch 'origin/database' into development
Working version with Philges approval.
fixed
Cleaned up working version, approved by Philge. Superfast.
Merge remote-tracking branch 'origin/development' into process
Merge branch 'process' of https://github.com/genomizer/genomizer-server.git into process
Merge remote-tracking branch 'origin/process' into development
Merge remote-tracking branch 'origin/development' into process
Merge remote-tracking branch 'origin/process' into development
Merge branch 'process' of https://github.com/genomizer/genomizer-server into process
Removed dead code
added fixes
Merge branch 'process' of https://github.com/genomizer/genomizer-server into process
ratiocalculation fix
Merge remote-tracking branch 'origin/development' into process
	Merge remote-tracking branch 'origin/process' into development
cleanup included in conversion