Initial connection of genome-analysis module with hpg-variant suite


Former-commit-id: 2db565e4115a4ea6908ae8693d56e868680c8c42
TDT connection to hpg-variant suite


Former-commit-id: b120c94ac8d89e3f0857b4d33b0ff39e26859687
Logging messages added


Former-commit-id: 79c387c765f4a26485507818d1a40dff4262bec9
First functional version of TDT test


Former-commit-id: eca26dd2cadfa0657dcc550b080341b98d878438
Output file formatted, code cleanup


Former-commit-id: 661438e7963ccf0354df6b55604ca1fa1f3e9a68
Checked output_filename argument in tdt_runner


Former-commit-id: a0c1c01efc1cf968d3ff79825b4cd2788ac97507
Solved conflict between list_free functions (containers/list and check library), hpg-variant/effect makefile fixed to compile tests


Former-commit-id: 1affc4eb15623e8c8bd252063ad2cb0efd891328
Compilation of first unit test for TDT


Former-commit-id: 74345ce34b75cbf2a15330330b16669be5b01128
TDT unit tests


Former-commit-id: 52c532dfb864665c1bdbe2344461f77b8b15708f
Unit test for checking several families against the same locus


Former-commit-id: 2e1b39ab2bbdecb9023d61a4228c05d2895ce664
New error defined (can' read configuration file)


Former-commit-id: 3b757f31d798f0c2f055d34dd0f6abb54efef0f2
System testing for hpg-variant gwas --tdt, checking results against Plink's.


Former-commit-id: 7ff1365f2017c07419c6de80c85c57ba2867f22d
Merge branch 'next-testing' into next


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Merge branch 'temp' into next


Former-commit-id: c772152e56ffb7596bc4fba6ac8cbb9a314dcca4
Individual condition independent from phenotype


Former-commit-id: 4234941d2d9e5305ec0b51e510c43301bff3c2fc
Mendelian errors checking for valid families and 2 of the types defined by Plink


Former-commit-id: 4b36d36cce350b2ccde61b67bf9de53d822cdc8b
Mendelian errors testing for valid families and 4 types defined by Plink


Former-commit-id: 483a5ea87027f16e79541ae20fe051aa7a20e85d
Merge conflicts with 'next' branch solved


Former-commit-id: 56f948375f74c9c3b398c71102bfb1a02a53753a
Unit testing for mendelian errors checking finished


Former-commit-id: 14f6fd706d62eeca0938fe9151585bdf49214c5c
TDT runner and test itself split in two files


Former-commit-id: 54c0378486b4aece29915eaab6ce5bd6191b44f4