Paper: pyFRET: A Python Library for Single Molecule Fluorescence Data Analysis (R. Murphy, S. Jackson, D. Klenerman)

Paper for EuroScipy 2014 proceedings :)
I just saw the above text. Firstly, I think it's insufficient explanation of each parameter... What each factor means and how to determine it should be discussed, at least at a very high level. Second, many people will just jump to the code, so you should define the exact values you used for this example, and with each definition, add a `#` commented line that briefly describes the meaning of the parameter.

Ideally, this code should be runnable exactly in the repository or in a companion tar file that can be downloaded somewhere. This is not true currently (`"path/to/my/files"`).