adding ability to update file if MD5 changes and already imported, plus remove lane if deleted from irods
Merge remote branch 'upstream/master'
Merge remote branch 'upstream/master'
check in recent updates
check in recent updates
merged recent changes with master copy
removing test file
Merge remote branch 'upstream/master'
Merge pull request #36 from andrewjpage/master

update tests for fastq direction
Merge pull request #38 from andrewjpage/master

GPL
Merge pull request #39 from andrewjpage/master

pull fragment size for wells from batch requests
added confirm completed message
Merge pull request #41 from CraigPorter/add_message

added confirm completed message
set mysql_auto_connect
Merge pull request #42 from CraigPorter/try_auto_reconnect

set mysql_auto_connect
changes for specific min run_id and withdrawal of lanes
Merge remote branch 'upstream/master'
Merge pull request #45 from VertebrateResequencing/vertres

Changes made to vertebrate resequencing update pipeline (updated)
update_pipeline.pl -md5 option now works properly by actually checking if the iRODS md5 changed
corrected logic for applying individual to sample in use_supplier_name mode - now this will actually update a db that previously did not use this mode