Added git reset command to developers information
Galaxy instance: debugging enabled
- GalaxyWorkflowMetadata: todo added - use the API to get the tool configuration details.
- GalaxyConfiguration: create Galaxy instance with debugging enabled.
- README.md: todo added - add code coverage.
- DevelopersInformation.md: todo added - perhaps add some information on branches.
Changed git config core.autocrlf and .gitignore
- set git config core.autocrlf to false.
- .gitignore: added some ignorable directories and files.
Use normal GalaxyInstanceFactory.get
- todo: use new get method with debug parameter when a blend4j release with the 2014-06-28 changes is available.
Changed comment syntax for todo item
Changed comment syntax for todo item too
- DevelopersInformation.md: changed the comment syntax for the todo item here too.
Configurable download directory
- Workflow: added download directory getter and setter.
- BaseWorkflow: added download directory field (with getter and setter).
- GalaxyWorkflowEngine: used the download directory in the downloadOutputFiles method.
- GalaxyWorkflow: renamed inputs and outputs fields to inputsMetadata and outputsMetadata.
- GalaxyWorkflowTest: use renamed getInputsMetadata and getOutputsMetadata methods.
Merge branch 'master' of https://github.com/CTMM-TraIT/trait_workflow_runner
Add galaxy workflow declaration file to src folder

So it could appear in jar