moved code for miseq runfolder upload to sisyphus.pl
fix indentation problem with shell script output, add usage
save backup of miseq samplesheet explicitly, rsync include file
harmonize rsync include file
bugfix
fixed renaming bug
Merge pull request #1 from b97pla/feature/miseq_upload_as_argument

Feature/miseq upload as argument
changed default email address for quickreport
use flowcell id to seed the random number generator
made sender address for quickreports configurable
Merge pull request #19 from b97pla/feature/miseq_upload_as_argument

Feature/miseq upload as argument
Merge pull request #20 from b97pla/feature/use_mailing_list

Feature/use mailing list
Merge pull request #21 from b97pla/feature/use_random_seed_for_sampling

Feature/use random seed for sampling
look for separate miseq analysis folder
If there is only 1 core, use 1, not 0.5 cores.
Truncate the number of threads if uneven number
tarball miseq analysis folder, made sisyphus md5 file editable
changed to hanlde miseq analysis in bash script
Merge branch 'sisyphus-dev' of github.com:Molmed/sisyphus into feature/miseq_upload_as_argument
removed miseq analysis folder rsync include file