now splitter will find fastq files in subdirs at preliminary check
Merge pull request #38 from janders3-nmdp/less_dumb_fastq_check

now splitter will find fastq files in subdirs at preliminary check - fix #37
Redirect mpileup (reads) output to file
Merge pull request #40 from ckennedy-nmdp/process-labcorp-data

Redirect mpileup (reads) output to file