Replace 'seeds' with 'vertices' in segment() to indicate that these are the vertices to segment and not just the seeds


Former-commit-id: 95c3bda2b3c68c45f277ca2822fdbf81bcdad969
Change folds and fundi arrays to start at 0, with default of -1


Former-commit-id: 03f87316db4a248141811d879b5d91fe6eef2179
fix a minor bug in io_vtk.py


Former-commit-id: 65f595d23ef6b1d0a7362f71805f79ac488911a4
Merge branch 'master' of github.com:binarybottle/mindboggle


Former-commit-id: d9458644b3b1ebc91f0550b9266db36dd8784fed
Working on segment() with multiple seed lists...


Former-commit-id: 4b87f1a2300baed8accbe5a4896e68206858d3c6
Merge branch 'master' of github.com:binarybottle/mindboggle


Former-commit-id: 94da88d95cefaa066fbbfc6f97ebf438a996ef70
add structure coping into maps_to_second_surface.py, allowing users to map structures from pial surface to inflated surface


Former-commit-id: b46a3f98f9c6e6525885c33edc3e5a95ca0c057e
Merge branch 'master' of github.com:binarybottle/mindboggle


Former-commit-id: 183c8dc06f605120d957604763c3c5a8da005800
Rewriting segment() to accommodate multiple seed lists...


Former-commit-id: 0bfb1b5ce39ded28bce0fcca2273d4616481c089
Merge branch 'master' of github.com:binarybottle/mindboggle


Former-commit-id: c0106c416b7e880e3e8f5c095c8545530525e465
disable options for secondary surface feature output in vtk_extract.py


Former-commit-id: 343d0f660063cc92766f85ef9f7ba3177ac908b0
disable options for secondary surface feature output in fs_extract.py


Former-commit-id: 488264aef0d3577aebbd0e842d52347d5414ee6e
disable saving features onto second surface in libbasin.py and libfundi.py


Former-commit-id: 3e34169c428b6689fdf5afd6e33a04fd5066903f
fix up libbasin for extract clouchoux-type pits; modify vtk branch of getFeatures in libfundi.py; remove clouchou.py and clouchoux_extract.py; fix minor bugs in io_vtk.py


Former-commit-id: b4b8e686fe970fe2cc74bd206fc38595a1438746
Replace old segment() with a new segment() function that accepts an optional list of seed lists to segment vertices by growing from each seed list. Remove 'max_region_label' output.


Former-commit-id: 1c2555c9bef25adf38845fa7dc695f19765cfb35
Merge branch 'master' of github.com:binarybottle/mindboggle


Former-commit-id: 44047f1212b29a2dfde172552b6ce9b103c3ba0c
Fix: Clear region_lists after full growth in single seed selection

Former-commit-id: 432a881e601788836f87d44634439ac24252947c
Fix segment() single-seed loop


Former-commit-id: f6cc32c84f2ad534bac44f397482e5b911551eb4
Rewrite identify_sulci.py from scratch, recognizing the ambiguity when a fold contains multiple sulci who share labels.  Added segmentation with multiple label boundary seeds.  Debugging next...


Former-commit-id: db1f6ea474a5610006e525247ef6f1194c25e50e
Alter stdout statements


Former-commit-id: 3c6a355defd1127a1eed5804d11a9f7b074b86a9