Created site with green background that matches the Data structures main site.  Changed css to not rely on bootstrap but just the aspects needed from bootstrap.  Left navigation links current do not work.  Progress bar relies on bootstrap javascript and jquery.
Deleted unused files (announcements.php, home.php, etc).  Deleted bootstrap css files, moved all style sheets into resources.  Moved all images into resources.
Fixed broken links in left navigation panel.  Got rid of progress bar.  Bootstrap, and JQuery are no longer required for the front end.  Made panels have a border radius of 0 to match background
Moved index and resources into a public folder.  Added TA grade div with toggle button that only appears when a TA grade is available
Uploading a zip file now works.  Added required functions in model for zip file upload.  Error checking is included but needs to be handled
Connected controller to get variables from model functions.  Added upload popup to verify the user wanted to uploads notifying them of submissions used / submissions allowed
Fixed homework page version number selecting process.  Changed MVC to support assignments with names other than homework
Added more comments to code
Version numbers to choose from now read from what exists in the file.  Added support for all assignments names (Homework, Lab, etc).  Cleaned up controller and model code for readibility and clarity.
Directory structure svg
Sample data configurations to link to for testing
Modularized highlight.js and made diff more modular
changed from assignments and assignment numbers to assignment_id and assignment_name. Fixed MVC appropriately
Merging
Separated stylesheet
Merge branch 'green-ui' of github.com:JFrei86/HWserver into green-ui
Remade CSCI example directory to match new structure
nerp
Merge branch 'green-ui' of github.com:JFrei86/HWserver into green-ui
Placed json files into example directory hierarchy