Making eE use logit(theta) for rhat.
Playing with output.
Fixing warning.
Preparing for 0.7.0 release with VB included.
Removing debug message in eE.
Hopefully fixing leak in VB.
adjusting rhat output.
Merge branch 'rhat'
Updating changeList to include rHat changes.
Some typos in comments.
Final changes to 0.7.0 version before release.
Enabling use of m_alphas for pA expression.
Temporary fix for effective lengths and fix for gencode parsing.
Fixing noforce in eHP.
Read name fix.
Merge branch 'master' of ssh://valiant/local/private/glausp/gits/bitseq
Simplifying ASA digama function and adding R_INTERUPTs
Moving common.h after all includes to avoid compilation issues with R on Mac. Also a bit of cleanup.
Fixing problems with FASTA reads.
Changing effectiveLength computing parallelisation to hopefully fix compialtion issue on Mac.