Remove duplicate group in Disproportionation family
Remove duplicate and misplaced group in intra_H_migration family.
Removed some duplicate groups from H_Abstraction.
Remove duplicate groups from Subsitution_O family.
Remove duplicate group from R_Addition_MultipleBond family.
Clear up ambiguity about C2O in GRI-Mech transport.

Indicating 2 as the number of radical electrons can mean
either 2S or 2T form, which is too ambiguous for a single molecule.
Therefore I split the entry into 2 duplicate entries, one for
C2O(T) and one for C2O(S).
Eliminate duplicate group in Intra_RH_Add_Exocyclic family.
Update R_Addition_CSm family to reflect changes due singlet restriction on CS.

See commit 8c656a9c1c5798 for details on similar changes to R_Addition_COm

Updated reaction recipe so that we are changing lone pairs rather than radicals.
Change default usage of R_Addition_CSm family to 'False'.

This was done on a recommendation by @cclass86
Revert most intermediate adjlists in kinetic groups to old style format.

Turns out only R_Addition_COm had almost all the intermediate adjlist style groups.
To keep consistent with the other family I reverted them back.
Use wildcard 'X' representation in groups to represent wildcard radical electrons.
Fix 1-hydroxybutyl + O2 training reaction in R_Recombination which had unsaturated adjlists.
Fix non-neutral adjlist for HNNHO in Nitrogen_Dean_and_Bozzelli kinetic library.
Fix some non-neutral adjlists in Nitrogen_Glaborg_Gimenez_et_al kinetics library.

Also get rid of some extraneous lines (probably from faulty copy-paste).
Fix non-neutral molecules in GRI-Mech transport library.

Remove ion CN- from the library as well.
Fix non-neutral adjlists in Nitrogen_Glarborg_Zhang_et_al kinetics library.
Fix non-neutral molecules in thermo_DFT_CCSDTF12_BAC thermo library.
Specify number of lone pairs in 1+2_Cycloaddition family where needed.
Write explicit lone pairs for Carbene in 1,2_Insertion family.
Alter forbidden groups in Disproportionation family for singlets specifying lone pairs.