Added ability to dump out intermediate T-scores during permutation

For now this just dumps it to a separate file; this can be useful
for use downstream.
Update requirements.txt
Update requirements.txt
[BUG] --gt-filter was not being enforced from query tool unless a GT* column was selected.
bump to version 0.6.3.2
[DOC] update history for 0.6.3.2
move to 0.6.4.a
Provide more flexible checking of curl dependency to avoid non-zero exist errors due to firewalls. chapmanb/bcbio-nextgen#207
Work around issue where pip fails on fixing distribute issues if distribute is already fine. chapmanb/bcbio-nextgen#207
Upgrade curl checks to avoid issues with non-zero error codes on older curl. chapmanb/bcbio-nextgen#207
Use batch mode for miniconda installation to avoid license interrupts
Ensure gemini configuration written before checking download dependencies to allow for easier restarts during failure
[DOC] add script for creating VISTA enhancers annotation file.
[ENH] add VISTA enahncers as new annotation.
Merge branch 'master' of github.com:arq5x/gemini
Provide ability to install gemini without data, and subsequently update only data. Allows separation of code from data to can distribute code-only versions in VMs and docker containers.
Identify S3 downloads with permission denied errors and raise informative message. Handle missing hit regions on latest pysam which changed error type returned
typo
[TST] unit test for columns containing gt substring
typo