modification c149

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@356 db641661-14cc-1e01-c2f8-e77ac6f8a696
spectrast2tsv / spectrast_cluster: Support for SpectraST 5.0

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@357 db641661-14cc-1e01-c2f8-e77ac6f8a696
spectrast_cluster: fixed support for SpectraST 5.0

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@358 db641661-14cc-1e01-c2f8-e77ac6f8a696
[RELEASE] version 0.2

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@359 db641661-14cc-1e01-c2f8-e77ac6f8a696
register before uploading

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@360 db641661-14cc-1e01-c2f8-e77ac6f8a696
[TEST] add dam reader test

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@361 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FEATURE] update dam method reader

- based on code by Sigurdur Smarason (thanks a lot)

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@362 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FEATURE] switch CLI to argparse

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@363 db641661-14cc-1e01-c2f8-e77ac6f8a696
[NOP] whitespace change

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@364 db641661-14cc-1e01-c2f8-e77ac6f8a696
[INTERNAL] cleanup

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@365 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FEATURE] update to v2 of methodDamReader.py

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@366 db641661-14cc-1e01-c2f8-e77ac6f8a696
Adding the initial test file for methodDamReader, very limited for now

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@367 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] spectrast2tsv / spectrast_cluster: iRT = 1.0 fix

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@368 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] spectrast2tsv / spectrast_cluster: iRT = 1.0 fix

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@369 db641661-14cc-1e01-c2f8-e77ac6f8a696
[RELEASE] version 0.2.1

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@370 db641661-14cc-1e01-c2f8-e77ac6f8a696
help text changes for spectrast2tsv.py

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@371 db641661-14cc-1e01-c2f8-e77ac6f8a696
[fixed] OpenSwath and peakview outputs were slightly different: when several transitions have the same intensity, the order was not the same for both outputs (and thus they could be thresholded differently).

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@372 db641661-14cc-1e01-c2f8-e77ac6f8a696
Updated tests for damReader with more datafiles and one minor change to the damReader itself

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@373 db641661-14cc-1e01-c2f8-e77ac6f8a696
Commented the new tests for damReader to explain what they are testing for

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@374 db641661-14cc-1e01-c2f8-e77ac6f8a696
Updated the original expected output csv file for damReader to reflect the changes in the csvWriter

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@375 db641661-14cc-1e01-c2f8-e77ac6f8a696