addded the subversion version in BioC
updated svn
changes to build under Windows and deletion of temp files
clean up actions in help files
removing other temp ff files
clean up of ff files when merging = none in cghseg and wavelets
Try to pass checks in Windoze: all examples in tmp dirs and more Sys.sleep
updated NEWS file
with changes suggested by Dan for building
with my changes to vignette
minor change in stop.na.inf
new version of adacgh2 for BioC with explicit removal of rlecuyer library
more Sys.sleep
added more Sys.sleep to try to prevent check problems in Windows
changing paths and moving common code to web-apps-common
more paths