HIV PR consensus sequence
The aligned file of PR sequences of all patients

This file is generated with a software ClustalX. In this file, the
spaces has been added in a correct way following the alignment. The
file type is phy. I don’t know whether it is in correct format using
github.

If it is, you can try to open file with following codes.

require(Biostrings)
require(seqinr)

virusaln  <- read.alignment(file = "training_data.phy", format =
"phylip")
virusaln$seq
Merge pull request #1 from XingqiShi/master

HIV PR consensus sequence and aligned files
Adding ctree script and codonized csvs

Adding ctree script and codonized csvs
Merge pull request #4 from namebrandon/master

Adding in csv's and .r script