Changed colors so that it will be clearer what the difference is when printed in black and white.
Changed parallel coordinates plot to show MFs colored by adjusted p value instead of abundance tertile.
Adjusting colors.
Added median CV to each facet in graphs for manucript.
Changed the order of plotting so that most significant mass features are plotted on top of the graph.
Adjusted facet labels to reflect column chemistry and ionization mode rather than A-D. Made a small TIC plot for the flowchart figure.
Changed symbols in PCA graph for manuscript so that they're easier to differentiate. Added a small example graph for Fig 1.
Adjusting colors, point shapes, facet titles, etc.
Adjusted graph colors, titles, etc. for manuscript.
Merge branch 'master' of https://github.com/shirewoman2/CHC2