tweaking alignment params for massive speedup
fixing phantom STR problem.
updating default alignment params
resolving merge conflict
updating link to website in readme
Merge branch 'master' of https://github.com/mgymrek/lobstr-code
updating usage message for allelotype
Merge branch 'master' of github.com:mgymrek/lobstr-code
make runinfo print a message if no reads are aligned
updating scripts directory to include GetSTRInfo and not include the old check scripts, which need to be rewritten for the new outputs
fixing off by one bug in reporting alleles in the VCF file
fixing more problems with allele lengths < 1bp in the VCF