Updated MLN chapter.

	modified:   Thesis.idx
	modified:   Thesis.ilg
	modified:   Thesis.ind
	deleted:    Thesis.pdf
	modified:   Thesis.tex
	deleted:    chapter1.tex
	deleted:    chapter2.tex
	modified:   chapter2_STIP.tex
	deleted:    chapter3.tex
	deleted:    chapter4.tex
	modified:   chapter4_MLN.tex
	deleted:    chapter5.tex
	modified:   titlepage.tex