- add features support for Genbank proxy parser
- add parent sequence parsing into ProteinSequence
- add DBReferneceInfo as Feature
Merge pull request #24 from biojava/master

Catch back up with Trunk
add understanding non-standard DNA nucleotides
- add junit tests for GenbankProxySequenceReader and another LocationParserTest
- fixed problem with 'db_xref' parser in GenbankSequenceParser
Merge biojava/biojava branch
add log4j 2 config file
add slf4j logger to parsers
replaced "/tmp" path by more generic: System.getProperty("java.io.tempdir")
Merge github:biojava/biojava master
fixed misspell in log4j2.xml file
Improved docs, more logging and improved pdb vs cif test, see #162
Merge pull request #25 from biojava/master

Catch back up with Trunk
Merge pull request #136 from jgrzebyta/master

add features support for Genbank proxy parser
Merge pull request #163 from josemduarte/master

Rewrite of docs in Chain interface
New feature: parsing of MTRIXn/_struct_ncs_oper records, 
generally used for viral proteins in order to generate the full AU
Improved the unique xtal interfaces calculation
Reduced memory usage of unique interfaces calculation
fixed misspell in property name: "java.io.tempdir"->"java.io.tmpdir"
Merge pull request #164 from jgrzebyta/master

fixed misspell in property name
Merge branch 'master' of https://github.com/biojava/biojava