Fix for webserver_root and web_root variables in windows.

 -Note this has debugging lines in that need to be removed before official commit.
fixed upgrade script to also update with patch if applicable
minor update to ubuntu package
Modifications for module installer in openemr.
Zend framework 2 based module installer that can be used to install and integrate custom modules developed as separate modules into the openEMR. The application module is the core module which contains the database handling functions and other common functions. Please find the documentation for the same in the following links:

WhyModulesInstaller.pdf - http://sourceforge.net/p/openemr/code-review/232/attachment/WhyModulesInstaller.pdf
ModuleInstaller-DeveloperGuide.pdf - http://sourceforge.net/p/openemr/code-review/232/attachment/ModuleInstaller-DeveloperGuide.pdf

Please refer line no.26 in zend_modules/init_autoloader.php for setting up ZF2 Library Path Settings.

Signed-off-by: Ajil P M <ajilpm@zhservices.com>
ZEND project: removed the DeleteAcl() function in interface/modules/zend_modules/module/Installer/src/Installer/Model/InstModuleTable.php
ZEND project: set writable permissions to zend module config file at interface/modules/zend_modules/config/application.config.php
Added the zend framework 2 library, the path is specified in line no.26 in zend_modules/init_autoloader.php.

For using custom ZF2 library change the path in the specified file.

Signed-off-by: Ajil P M <ajilpm@zhservices.com>
Upgrade phpmyadmin project (commit 1 of 3; This commits removes old phpmyadmin version)
Upgrade phpmyadmin project (commit 2 of 3; This commits brings in phpmyadmin version 4.2.5)
Upgrade phpmyadmin project (commit 3 of 3; This commits integrates phpmyadmin into OpenEMR)
incremented the v_database counter for the database changes in prior ZEND commit
Fixed pharmacy list selector to indicate when current selection is not in the list.
Fix for encounter forms too wide in patient report PDF output.
Added support for fields in LBF visit forms for document templates.

Conflicts:

	interface/patient_file/download_template.php
Support for the CMS Patient Portal.
ZEND PROJECT; support in setup.php script and in ubuntu/debian/mint packages
Save lab-generated order ID and show it in results display.
Fix for pubpid assignment by CMS Portal. Cosmetic fix for procedure_order.control_id type change.
Skip manual selection of patient when CMS portal login ID is present for the demographics form.
updates to documentation, improved logging