Edited awe wrapper script to accept file type as parameter.
Merge branch 'master' of github.com:MG-RAST/pipeline
Merge branch 'master' of github.com:MG-RAST/pipeline
Added M5NR and M5RNA to expanded_sims2overview script.  These were being omitted from the analyses.
Merge pull request #341 from jaredbischof/master

Fix to expanded_sims2overview so M5NR and M5RNA summaries are being computed again.