1.0beta.15: Init headerBuffer flag when adding buffers

Was occasionally causing deadlock during sort
1.0dev.57: Merge 1.0beta.15
1.0beta.16: fix BAM cigar string generation for trailing I fixup
Remove old, incorrect comment
Merge branch 'dev' of https://github.com/amplab/snap into dev
1.0dev.58: Add -F l (filter for long enough) flag, reformat console output
Linux build
Fix up stats so that the add up properly for paired-end
Merge branch 'dev' of https://github.com/amplab/snap into dev
1.0dev.59: daemon mode
Disable daemon mode until the Linux version works
Make daemon mode work on Linux
1.0dev.60: daemon mode for Linux (this commit is really just fixing indentation and updating version)
1.0dev.61: fix cigar string generation near the end of contigs with indels
Remove binary that shouldn't have been committed in the first place
Merge branch 'dev' of github.com:amplab/snap into dev
binaries for dev61