Began rewriting C/Fortran wrapper generation to use Doxygen/Python instead of gccxml/XSLT
Continuing to reimplement wrapper generation
Merge branch 'master' of https://github.com/peastman/openmm into wrappers
Finished C wrapper generation
Implemented generating Fortran wrapper header
Finished wrappers for main library
Bug fixes to wrapper generation.  Implemented wrappers for AMOEBA.
Removed files related to the old wrapper generators
Include serialization classes directly in main library
Created C/Fortran wrappers for serialization
Merged changes from main branch
Pickling an Element object works correctly
Merge branch 'master' of https://github.com/peastman/openmm
Merge pull request #237 from peastman/master

Pickling an Element object works correctly
RPMD works correctly with a barostat
Merge pull request #238 from peastman/master

RPMD works correctly with a barostat
Fixes for compilation errors on Visual Studio 2013
Merge pull request #239 from peastman/master

Fixes for compilation errors on Visual Studio 2013
Bug fixes to Fortran wrappers
Plugins work with CPU platform.  This involved separating the reference implementations of plugins into their own libraries.