some trouble with solving conflicts with file input molecules in the product part don't lose their bounds if I try the same example manually it works e.g. 'Z_P+_A_[Z] \n A_ppi_B; ! A_[Z]-{P} \n X_p-_A_[Z] \n X_[PD]_P+_Hog1_[(T174)] \n Hog1_[n]_ppi_Hot1_[m]; ! Hog1_[T174]-{P} \n Ptc1_[PD]_P-_Hog1_[(T174)]'