Update vgl library to fix clipping bug.

Change-Id: Ifebf955a77c5ea062dd528d7cbb7c55142ff8b98
Formatting cleanup which shouldn't affect the code.

I also changed the test that was failing to the proper result
even though the test isn't fixed yet.

Change-Id: I49a9fa27b0fa17005fd41212986839f513d06b3a
Fixing the way that the cached data is accessed.

Before, the field data was getting cached incorrectly in that
it was accessing the cached data set and field data when it
only should have been accessing the cached data set but
current point data.

Change-Id: Ic15f84541ac98303d5526c81d1341e2cc589ca88
Add area parameter in endInteraction event for Web

Change-Id: Ib18bf718469c5b1338c7443744fc07f1a1172137
Attempt to fix race condition.

There was a race condition in vtkDataEncoder when terminating all worker
threads. There was a potential that worker threads would terminate just before
the master thread started to wait for them to terminate. This patch addresses
that issue by ensure that no threads can terminate until the master thread
starts to wait for them.

Change-Id: I7c9b7571e03b7d19a30329403d5c4dbfc3c2ad3e
More particletracer cleanup that shouldn't change behavior.

Change-Id: If4b3a83fcb842bb0a692df10efbd7da71ef29141
Now updating the particle age properly when it exits the domain.

Change-Id: I1e75ab9f65a23c5038e1c8ce06a20464987dc364
Improving the documentation of vtkParticleTracerBase.

Change-Id: Icc00099eb296d242e4ae5ab05f928a7bdc74e108
Reverted change to vtkParticleTracerBase specific setter macro.

Several setter methods needed to also reset the cache so I needed
to revert back to the original macro that I removed during
refactoring.

Change-Id: I8efbfbaaf36fbf17345dd4748b18e77236b4693d
Update xdmf to compile with clang 3.4 and c++11 enabled.

Change-Id: Ie9b337d48b26fe4a67700c0dbbff55827cd9739c
Fixed the install of chemical data files

The BODR data is needed at runtime, added install rule.

Change-Id: I1c7560799e2432acdf1fcb298e48f9ca63e22e4f
BUG 7589 Fix Mingw Java libraries name

See:
* http://vtk.org/Bug/view.php?id=10969
* http://vtk.org/Bug/view.php?id=7589

Change-Id: Idad20d624d4d23b7401d22b7c7b7b74506a9ff6f
Merge branch 'chemistry-data-install-rel' into release

Change-Id: I68a929ac6de0f25dc511a72ab854a92d072201db
Fix for polyhedron cells.

This happens for datasets containing a mixture of cell types.  The
vtkIdList was not reset consistently between polyhedron cells and other
cell types.

Change-Id: I2ace508eff3515ac2b6173250d8e2d338e4ba3de
Merge branch 'fix-append-filter-for-polyhedron-cells-rel' into release

Change-Id: Ibaf0ec68f0957d6978fd1bef695655c84c4194b8
BUG: Fix build failure in RenderingParallelLIC on Intel compiler

MPI symbols weren't defined when linking the RenderingParallelLIC
library on Intel compilers.

Also, removed unnecessary include_directories() commands.

Change-Id: I6c5eac0dc5b0c40db9bd0f0882bd60110e98a756
Merge branch '14503_fix_intel_build-rel' into release

Change-Id: I3fbd01ecf7479919a39272feb265ad71d7aaa310
Merge branch 'clang_libc++11_support-rel' into release

Change-Id: I9be778ca339261c6d43976e05d6b87a3be7d57e7
surface LIC - stl and NULL

BUG 0014493. cast to pointer type when using NULL
to intialize stl containers of pointers.

Change-Id: I7ee397059a7be2639edccc9258842e19665085cd
Merge branch 'gcc-4.8.3-compile-error-rel' into release

Change-Id: I1c669bab1c7449970adb43b4f2d334ba95e6e635