Initial file renames
Rebuild auto-generated Rcpp files
Trying to make Travis happy with cyclops branch
Trying to make Travis happy with cyclops branch again
Travis still hates me
Trying to show Travis some love
Oh, show me some love, Travis...
Renaming CCD to Cyclops
Name change to Cyclops
Move fixes for name change
Tell Travis about new name
Update README.md
Merge branch 'master' into shared_ptr