Adding work that was done previously. Can be taken further.

ExomeSASCP010 (work done on CAF test exome run)
 - bam2fastq_on_ExomeSASCP010.qsub, fastqc_on_ExomeSASCP010.qsub, flagstat_on_ExomeSASCP010.qsub, qualimap_on_ExomeSASCP010.qsub (QC plots)
 - call_snps_samtools_ExomeSASCP010.bam.qsub (Allignment called with samtools on the CAF called BAM file)
 - bwa_build_index.qsub (Not sure if this was actually used, but the initial plan was to do allignment and variant calling from scratch and to compare it with the CAF data)

Illumina_FTS
 - copy_vcfs_from_dakon_to_hex.sh (Script to copy data from dakon.cbio to hex. From dakon I'm unable to push to a Galaxy instance so need to do it from a hex node)
 - deconseq95i90c_LP6005857-DNA_A01.unmapped.qsub (Checking for any bacterial or viral contamination in the unmapped reads. The uncontaminated set would be of interest. I haven't checked the results)