Merge pull request #144 from Gerbenvandervries/master

added fastqc and copy results protocols
fixed paste tab problem
Merge pull request #145 from kantale/master

fixed paste tab problem
New parameter file for NIPT pipeline specified for the 5GPM paths and software
Merge pull request #146 from ljohansson/master

New parameter file for NIPT pipeline specified for the 5GPM paths and so...
Merge pull request #147 from Gerbenvandervries/master

added QCstat protocol, and added parameter and workflow for that step
Merge pull request #148 from Gerbenvandervries/master

added protocol for genereating a qc report
added .gitignore and .classpath to gitignopre file
Added new parameterfile and workflow file and added script for copying results files to resultsdir after running the pipeline is completed
Merge pull request #149 from ljohansson/master

Small update NIPT pipeline
parametersfile to be able to run the NIPT pipeline on the diagnostics cluster with a CopyToResultsDir step
Merge pull request #150 from ljohansson/master

parametersfile to be able to run the NIPT pipeline on the diagnostics cl...
Replaced all occurrences of $tooldir/scripts with $scriptdir.
change output dir
Merge pull request #154 from dirkdeweerd/master

change output dir
Merge pull request #151 from pneerincx/master

Replaced all occurrences of $tooldir/scripts with $scriptdir.
added GIANT pipeline
removed some unnecessary enters out of parameters file
removed some unnecessary enters out of parameters file
fixed comments of Pieter