fix show nii directory after conversion
small bugs fix
bug: integer comparison of bash if should use (( ))
change parsing names to allow CT_N2Eairway
remove the temp break in for loop
change dicom dir to pg4
change dicom dir to pg5
change dicom dir to pg5errata for N175 N176
change dicom dir to pg6
change dicom dir to pg7
segment lung masks
resample to 1x1x1mm for lung segmentation
add gitignore
change job name
use downsampled lung for segmentation
solve naming issues for downsampled files
use old SeparateLungs to complete the pipeline
get binary lung mask from lung label *_smooth.nii.gz to *_lungmask.nii.gz
remove comments after debugging
register using old ANTS