Changed all  to . Updated the include link for TAO variables and rules. Removed the include link for PETSc test. Added explanation for compiling without TAO
Updated the name of taosolver.h. Removed taoapp and corresponding functions. Updated the creation of the TAO solver. Removed preallocations that were commented out, moved them to rapid_net_mat.F90 and rapid_obs_mat.F90. Added calls to Mat SetUp for preallocation before call to GetOwnershipRange (new requirement in PETSc)
Updated the name of taosolver.h. removed taoapp and corresponding functions
Updated the name of taosolver.h. Removed taoapp and corresponding functions. Updated the creation of TAO solver and its options. Added PETSC_NULL to the call to rapid_phiroutine.F90
Added preallocations from rapid_create.F90 for info
Updated the name of taosolver.h. removed taoapp and corresponding functions. Added the IS_dummy variable that sees to be needed for call to rapid_phiroutine (crashes without it)
Updated the name of taosolver.h. Removed taoapp and corresponding functions. Updated the name of TaoSoverTerminationReason