Merge pull request #8 from johnb30/master

Update README
Extensive changes to handle uploads, file names from PHOX_config.ini, and standardize error handling
Delete default.config.ini (PHOX_config.ini replaces)
Merge pull request #9 from philip-schrodt/master

Extensive pipeline changes
Added example of PHOX_config.ini to README.md
Merge pull request #15 from philip-schrodt/master

Added example of PHOX_config.ini to README.md
Format changes and update README
Merge pull request #16 from johnb30/master

Format changes and update README
Added phox_uploader.py
Merge pull request #17 from philip-schrodt/master

Added phox_uploader.py
Merge remote-tracking branch 'upstream/master' into dev

Sync up