remove Test-cl files
Update README
README: add section about R
ddl/oracle: remove ref to TM_CZ.TEMP
ddl/oracle: fix deps of targets on driver
ddl/oracle fix test for $ORACLE_MANAGE_TABLESPACES
ddl/oracle: fix tablespace-related DDL
Fix using hard-coded creds instead of ORAUSER/PASSWORD
LoadTsvFile: fallback to DELETE if TRUNCATE fails
ws
LoadTsvFile: change progress output
ddl/oracle: add federated_id

Checked out from london_hackaton (sic) branch.
LoadTsvFile: diagnose mismatch of # of columns
Remove i2b2metadata.birn
Fix data loading on oracle
ddl/oracle: add missing target dep
env: add target for building php
Quote path
Updated ETL pipeline. Added restriction pd.gpl_id=upd.gpl_id, so that only the rows from the deapp.de_subj_sample_mapping are selected for the specific platform for which you want to load mRNA data
Small change to load_expression.sh: the variable SOURCE_CD is not hardcoded anymore now. NOTE: you will have to add SOURCE_CD= <FILL IN YOUR SOURCE_CD> in the params file, otherwise the script assumes SOURCE_CD = 'STD'