[FEATURE,TEST] Adding a new, updated realignment module including tests.
[DOC,NOP] Adding dox documentation, whitespace cleanup.
[FIX] included sandbox folder into git’s ignore list
[FEATURE] updated MacPorts portfiles to seqan-1.4.1 and split them into seqan and seqan-apps
[FIX] updated README for manual port installation
Merge pull request #271 from weese/feature/fix-macports

[FIX] updated MacPorts portfiles and split them into seqan and seqan-apps
[FIX] updated seqan portfile (according to Macports recommendations), added archs to seqan-apps portfile
[FIX] license update
Merge pull request #272 from weese/feature/fix-macports

[FIX] adapted macports
[FIX] Thread: fixed thread start
[FIX] added const-ref constructor
Merge pull request #273 from esiragusa/fix/thread

Fixed class Thread
[INTERNAL] Refactorization of realign helper functions.
[DOX] Adding deprecation message to old reAlign() function.

Includes a fix such that links in @deprecated etc. are also translated.
[INTERNAL] Marking non-public functions and classes with underscores.
[FIX] ArgParse: fixed argument syntax
Merge pull request #274 from esiragusa/fix/dot

Fixed ArgParse version
[COMMENT] Adding a TODO comment in realignment.
Merge pull request #269 from holtgrewe/feature/realignment

[FEATURE,TEST] Adding a new, updated realignment module including tests.
[FIX] changed hash->std::hash, explicit cast