- bump version number to 0.0.2
- update requirements
- bootstrap script can be run from arbitrary working directory
Merge remote-tracking branch 'origin/bump-to-002'
bump
travis
tweak
run integration tests
Default to 1 thread for cmalign
bootstrap fixes; run tests in travis
Default to all CPUs in multithreaded sections
exit on error
Merge pull request #12 from fhcrc/all-cores

Make multithreaded tasks use all cores by default
bootstrap.sh installs raxml
deenurp basedir located directly below bin