Merge branch 'wayne.2014.08.15jarStart'
files to help making executables
Merge branch 'master' of https://github.com/wmaddisn/MesquiteCore.git
Changed build number of MesquiteModule
Moved TaxonNameFromSampleNamesFile to mesquite.dmanager
Merge branch 'master' of https://github.com/wmaddisn/MesquiteCore.git
Changed "Voucher" to "OTU"
Update "voucher" for "OTU" as appropriate
Starting from jar: adjustments for windows executable
Merge branch 'master' of https://github.com/wmaddisn/MesquiteCore.git
Minor changes to names
resolving conflict with CharacterData
Merge branch 'master' of https://github.com/wmaddisn/MesquiteCore.git
Reforming headers so as not to indicate version or last copyright date;
to eliminate need for frequent revision.
Disabled terminalInapplicable code
Fixed RAxML bug for model file when data partitioned AND some characters
excluded.
Udpate build number
Added loading of home phone number of module from phoneBook.txt file
from same directory as module class file.
Deleting offline manual
New Executables
Fix of phone home bug (checking wrong directory for writability)
New application bundles