[AIDA-125] use zylab incremental index on clinisearch.
[AIDA-125] Accept password via commandline.
[AIDA-125] report output directory is configurable.
[AIDA-72] correctly pass parameters into main.
[AIDA-125] Name indexing logs, to distinguish them from report logs.
[AIDA-125] generate report script creates a eligibility report and published a symink to the most recent version.