Add Custom mongod.conf support

- I realized that upstart job for mongodb was using /etc/mongod.conf instead of /etc/mongodb.conf so the file we were sending to the server wasn't being used.
- I added a custom mongod.conf support. If you have a mongod.conf file in the deploy project folder mongodb will be restarted with that config file when you use `mup reconfig`. This mongod.conf file will be used also with `mup setup`.
- I was getting `build is not a command` error when i try `mup deploy` i changed it to use `meteor bundle` command.