Partial commit for windows changes
chmod the boostrap

Don't always pass for the windows build
Bump build number and chmod whole dir
Numerous fixes for OSX

Need to test on Linux
Fix flags for Linux
Fixes for OSX
Windows, I don't trust you, I will ignore you

Manually set error level to 0 because there are no errors
thrown yet the batch script completes with errors
64bit Win fixes

Also, rebuild the debug version by default