Merge pull request #900 from hflynn/11955-further

11955 further docs fixes
Merge pull request #908 from joshmoore/bftools-fix-again

Flatten path to bioformats_package.jar in bftools.zip (see gh-901)
Update auto-generated documentation

Repository: openmicroscopy/bioformats
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Generated by BIOFORMATS-5.0-latest-docs-autogen#161 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest-docs-autogen/161/)