Add messages when updating the status of pairs.

The intention of this change is to make it easy for Jenkins to detect
when processing a particular pair has failed so that the build can be
marked "Unstable".  ("Failure" is then reserved for CQID crashing.)
Add function to get total number of indexed documents in solr
Merge branch 'master' of ssh://git/srv/git/genome
updated ur submodule to 16bcd51
Further modifications to AML trio SNV/Indel summary clin-seq command
change build id for test; see rt 97150
updated test data with Avi

The old strelka bed file had incorrect coordinates
dgidb has a new source ClearityFoundationClinicalTrial
Updated `genome` tab completion.