Removed cofoja as a dependency and simply removed all references to it. This allows building under Java 8, which has been out for a while. The old annotations can be replaced with javax.validation annotations later.
removed cofoja from IDE config files
remove cofoja-related items from build.xml and IDE config files
Merge pull request #1 from bpow/nocofoja

removed cofoja from IDE config files
Merge pull request #95 from dmyersturnbull/master

Removed Cofoja as a dependency.
Added an option to VCFWriter to write the entire FORMAT field, even if the trailing values are missing and could therefore be trimmed.  Also fixed ParsingUtils.split() to correctly handle the case where the only delimiter is the first character