Change Jetty file server to automatically detect SSL from server URL
Make filebroker protocol configurable via the tool
Typo fix in the tool Change interpretation.
Merge branch 'master' of https://github.com/chipster/chipster.git
Clarified DESeq.
Merge branch 'master' of https://github.com/chipster/chipster.git
Log genome build output
Merge branch 'master' of https://github.com/chipster/chipster.git
Merge branch 'master' of https://github.com/chipster/chipster.git
Finalise file broker SSL support
Merge branch 'master' into data_beta

Conflicts:
	src/main/java/fi/csc/microarray/filebroker/FileServer.java
	src/main/java/fi/csc/microarray/filebroker/RestServlet.java
	src/main/java/fi/csc/microarray/messaging/MessagingEndpoint.java
	src/main/resources/build.number
	src/main/resources/version.number