updated tests so most more of them pass, for very large files place them in the test dir manually, I don't want on github
updated all data files to be inline with gencode / ensembl and added mm10 annotations
moved datafiles to data dir
fixed regions a bit
moved datafiles to data dir

updated clip analysis display to include distributions, moving to oolite for testing

working on gaussian MM

added in the rest of the figures that I want in clip analysis

hacks to get stuff working on tscc

fixed distribution issues

a few more distribution changes with clipper

updated stuff so generators don't break, there is still a bug though

got figures working

updated clip analysis visualization
updated tests so most more of them pass, for very large files place them in the test dir manually, I don't want on github
updated all data files to be inline with gencode / ensembl and added mm10 annotations
fixed regions a bit
fixed up one regression
fixed another single regression
moved lots of file around
fixed trailing head left in call peak
fixed bugs added mm9 genomic regions (not properly named yet)
made some unused parsers raise NotImplementedError, modified behavior of the --verbose option
modified behavior of the --verbose option
updated timeout, and fixed bug with section length actually being gene length
Merge branch 'dev' of https://github.com/YeoLab/clipper into dev
splleing
indentation
consistency