Adapted existing Kettle-scripts to work with postgres
Adapted shell script to work with current proteomics data
Proteomics etl kettle scripts
Proteomics kettle etl fixes
Fix wrong dbms regression
Update proteomics_ETL.sh
Merge branch 'master' into improvements/proteomics_to_postgres

Conflicts:
	Kettle-GPL/Kettle-ETL/check_proteomics_filenames.ktr
	Kettle-GPL/Kettle-ETL/cz_end_audit.ktr
	Kettle-GPL/Kettle-ETL/cz_start_audit.ktr
	Kettle-GPL/Kettle-ETL/cz_write_audit.ktr
	Kettle-GPL/Kettle-ETL/get_list_of_proteomics_filenames.ktr
	Kettle-GPL/Kettle-ETL/load_proteomics_annotation.kjb
	Kettle-GPL/Kettle-ETL/load_proteomics_annotation_to_de_gpl_info.ktr
	Kettle-GPL/Kettle-ETL/load_proteomics_annotation_to_de_gpl_info_BK.ktr
	Kettle-GPL/Kettle-ETL/load_proteomics_annotation_to_lt.ktr
	Kettle-GPL/Kettle-ETL/load_proteomics_data.kjb
	Kettle-GPL/Kettle-ETL/load_proteomics_expression_data_to_lz.ktr
	Kettle-GPL/Kettle-ETL/load_proteomics_sample_map_to_lt.ktr
	Kettle-GPL/Kettle-ETL/run_i2b2_process_proteomics_data.ktr
	Kettle-GPL/Kettle-ETL/set_proteomics_filename.ktr
	Kettle-GPL/Kettle-ETL/valid_proteomics_params.ktr
	Kettle-GPL/Kettle-ETL/validate_proteomics_columns.ktr
	Kettle-GPL/Kettle-ETL/write_proteomics_audit.ktr
	Kettle-GPL/Kettle-ETL/write_study_id_to_audit.ktr
Update proteomics_ETL.sh

This shell script is just example and needs to be modified with own parameters anyway.
Merge pull request #10 from thehyve/improvements/proteomics_to_postgres

Improvements/proteomics to postgres