Reader for Amaris FlowSight .cif format

Conflicts:

	components/formats-api/src/loci/formats/readers.txt
Was not populating the pixel metadata - now it does.
One last tweak - turn off saveOriginalMetadata
Fix up indentation and remove tabs
FlowSight: fix a couple of minor issues with metadata population and the 'in' variable
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1154 (Leica: prevent exception when linking EmissionFilter)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1302 (Add branch-specific link for downloading the JAR file if unfound (rebased onto develop))
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1306 (Add support for PrairieView version 5.2 datasets)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1317 (Gatan: fix physical dimension parsing when the Z size is missing)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1323 (Add bit-level operations to RandomAccess{Input, Output}Stream)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1324 (Deltavision: conditionally ignore stage position values of 0)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1331 (C++: Add FormatWriter interface)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1335 (ND2: prevent NumberFormatExceptions when parsing text data (rebased onto develop))
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1336 (Minor memoizing fixes)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only: PR 1339 (Amaris FlowSight)
merge develop -Dorg -Ijburel/openmicroscopy:qa-submit-new -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1296 melissalinkert 'Add test for getRequiredDirectories' (label: exclude)
  # PR 1315 LeeKamentsky 'IM3Reader for Perkin-Elmer Nuance' (user: LeeKamentsky)
  # PR 1054 qidane 'Additional annotation points throughout the model' (exclude comment)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1249 PremyslFiala 'ND2 - Bug fixes' (user: PremyslFiala)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (label: exclude)
  # PR 1328 sbesson 'Use in-place caching by default in Memoizer' (label: exclude)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (label: exclude)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1265 qidane 'New units' (label: exclude breaking)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (label: exclude)
Already up-to-date.

Merged PRs:
  # PR 1154 melissalinkert 'Leica: prevent exception when linking EmissionFilter'
  # PR 1302 sbesson 'Add branch-specific link for downloading the JAR file if unfound (rebased onto develop)'
  # PR 1306 ctrueden 'Add support for PrairieView version 5.2 datasets'
  # PR 1317 melissalinkert 'Gatan: fix physical dimension parsing when the Z size is missing'
  # PR 1323 melissalinkert 'Add bit-level operations to RandomAccess{Input, Output}Stream'
  # PR 1324 melissalinkert 'Deltavision: conditionally ignore stage position values of 0'
  # PR 1331 rleigh-dundee 'C++: Add FormatWriter interface'
  # PR 1335 melissalinkert 'ND2: prevent NumberFormatExceptions when parsing text data (rebased onto develop)'
  # PR 1336 melissalinkert 'Minor memoizing fixes'
  # PR 1339 melissalinkert 'Amaris FlowSight'

Generated by OME-5.1-merge-push#449 (http://ci.openmicroscopy.org/job/OME-5.1-merge-push/449/)