Added dev notes and prep for resolution of permanence setting
partial work
Update .classpath
Working on straightening out the pool connection synapse thing.
Merge branch 'SpatialPooler_Ongoing_Dev' of github.com:cogmission/htm.java into synapsePoolWork

Conflicts:
	src/main/java/org/numenta/nupic/model/Synapse.java
almost straightened out pools and connections
change classpath
added hamcrest to libs
Remove explicit pathing of hamcrest to make more portable
Milestone reached with internal data model.
We'll see how this model structure sits with us...
Take out sys outs
Completed bumpUpWeakColumns
Added sparse versions of key methods to accommodate new sparsity changes in the Python SP
Merge pull request #48 from cogmission/SpatialPooler_Ongoing_Dev

Spatial pooler ongoing dev