update the pipeline
Merge branch 'master' of https://github.com/SciLifeLab/scilifelab
add comments
add comments to GenerateComplexityPlots.sh
added the two fields to sample level
finalized the qc and caliper flags
Merge branch 'master' of https://github.com/SciLifeLab/scilifelab into caliper_qc_flags
cleaned up redundant error handling
Merge pull request #396 from Galithil/caliper_qc_flags

Caliper qc flags
Merge pull request #395 from jun-wan/master

 
update htseq and complexity plots