Add restart button for cancelled jobs
Merge branch 'master' of github.com:LyonsLab/coge
fix bug in OrganismView

Add missing function calls back to organism view.

	modified:   web/tmpl/OrganismView.tmpl
Fix perl reference being displayed as html

	modified:   SynMap.pl
show psuedo assembly field only if SPA selected

	modified:   SynMap.pl
Fix timestamps and delay timers
create standalone script for order contigs

	new file:   scripts/synmap/order_contigs_to_chromosome.pl
Improve info busy behavior
Open in new tab instead of reusing previous tab
Add jex support for generating pseudo assembly

New generate_assembly end point will submit a generate pseudo assembly
task to be run.

	modified:   modules/MANIFEST
	new file:   modules/Pipelines/SynMap/MANIFEST
	new file:   modules/Pipelines/SynMap/Makefile.PL
	new file:   modules/Pipelines/SynMap/lib/CoGe/Pipelines/SynMap.pm
	modified:   scripts/synmap/order_contigs_to_chromosome.pl
	modified:   web/SynMap.pl
add pseudo assembly generation dialog

Switch pseudo assembly to new workflow submission endpoint. Add
dialog to notify user the assembly is being generated.

	modified:   web/SynMap.pl
	modified:   web/css/coge.css
	modified:   web/js/synmap.js
	modified:   web/tmpl/SynMap.tmpl
minor cleanup and typo fix

	modified:   modules/Pipelines/SynMap/lib/CoGe/Pipelines/SynMap.pm
	modified:   scripts/synmap/order_contigs_to_chromosome.pl
Check for already finished load
Fix typo
Add utility script to remove all derivative data for given genome
Add restart job icon
Merge branch 'master' of github.com:LyonsLab/coge
Updated link in annotation_pretty_print_html to point to GenomeInfo.pl for genomes.
Updated links from OrganismView to GenomeInfoeq
Add default tracks to browse link