Made 1.0 and 1.0_RC directories

To prepare for the new tutorials, everything has been copied into two
separate directories, 1.0 and 1.0_RC. Note: these numbers refer to
CellBlender's version numbers and not the version numbers of the
tutorials themselves. Also, the naming is misleading, as one would
expect there to be minimal changes between a release candidate and the
final release, but the differences between the two are quite
substantial.

1.0 is just a plain copy of everything in 1.0_RC for now but will
eventually contain all the updates needed for CellBlender 1.0. The older
version will continue to be maintained, since some users may continue to
use it for some time to come. However, this hopefully will require few
if any changes in the future.
Removed DReAMM and PSC DX info from install page.
Reorganized the main table of contents (TOC).

This will likely undergo additional reorganization (at least for the 1.0
directory) once the edits to the individual articles happen, but this is
a useful first step towards better organizing the tutorials.
Mark custom plotting plugins as advanced.

This marks two sections in the plotting tutorial (Installing Plotting
Plug-ins and Writing Plotting Plug-ins) as advanced.
Simplified the main TOC some more.

Everything after section four was more explicitly broken off into their
own individual sections so that there is no implication of dependency
between learning about "Advanced Models" and "Advanced Features". There
are still some dependencies that need fixed in the individual tutorials
themselves, but this will be recitified shortly.
Updated MCell download link.

Also updated Blender version info.
Updated the "Getting Started" tutorial.

This should now work with CellBlender 1.0 (instead of 1.0 RC). Almost
all the images have been replaced and reorganized.
Clarified information regarding plotting packages.

Since xmgrace and matplotlib are the only official way of plotting
reaction output from within CellBlender, I removed the mention of
gnuplot.
Update the "Visualize and Plot..." tutorial.

The "Visualize and Plot the Output" tutorial is now updated to be
consistent with the changes made in CB 1.0.  Some advanced sections were
tagged as such. It might be better to move these sections to the CB
google code wiki, since they are targeted at developers.
Added images for the "Visualize and Plot" tutorial.

These should have been added with the previous commit.
Updated the Clamp Concentration tutorial for 1.0

The images were updated and reorganized. Typos were fixed. The text was
streamlined and larger sections were broken up to make it easier to
follow.
Updated the "Release Pattern" tutorial for CB 1.0

The previous tutorial relied on creating the model by hand-editing MDLs.
Now that release patterns can be created from within CB, the tutorial
has been udpated to reflect this. A plot of the reaction data with
overlays was also added so users can clearly see the effects that the
different release pattern properties have.
Reorganized the MAPK images.
Updated some image names in Getting Started.

I also added a note about checking the console for error messages (and
how to enable it in Windows).
Updated the image file paths in the MAPK tutorial.

This change was left out from commit
f34d5f72f9860a57161c22dcc13a4b24551d64e7.
Updated "Intro. to Surface Classes" for CB 1.0

Updated and reorganized the images, cleaned up and streamlined the text,
made the tutorial independent of the "Getting Started" tutorial.
Update "Surf Classes & Surf Molec" tut for CB 1.0

Updated images and text for the "Surface Classes and Surface Molecules" so that
it is consistent with the changes in CB 1.0. Fixed some typos and broke up some
large blocks of text so it's easier to follow.

We should maybe consider merging this tutorial with "Introduction to Surface
Classes" or breaking that one up into two sections ("Surface Classes and Volume
Molecules" and "Surface Classes and Reactions").
Smaller sub-TOCs. Fixed typo. Updated intro.

I changed the max-depth of the table of contents for the "Advanced
Models" and "Advanced Features", so that they are a little easier to
parse (and hopefully less intimidating).

The introductory paragraph was updated to reflect some of the changes
that were made to the other tutorials (i.e. they are no longer dependent
on the "Getting Started" tutorial).
Update the "Var Rate Constant" tutorial for CB 1.0
Removed old commented out text.

Removed commented out text about old project files.

Fixed a section that was awkwardly worded and moved another section
around.