Fix edge case where initial connected percent is 1
remove REPOSITORY_DIR from includes

use only the **/include/ paths
remove autogenerated files

(are also in gitignore, just need to be removed from .git)
fix #includes
Merge pull request #63 from breznak/relative_includes

Remove root dir (REPOSITORY_DIR) from include paths
Merge branch 'master' of github.com:numenta/nupic.core into init-perm
Add license file
Merge pull request #67 from rhyolight/add-license

Add license file
Removed GPL instructions from license.
Merge pull request #68 from rhyolight/add-license

Removed GPL instructions from license.
Merge pull request #4 from numenta/master

merge numenta:master@HEAD
Deduplicate utils.hpp

Clean up utils/utils.hpp and math/utils.hpp but removing utils/utils.hpp
and modifying the only file that uses utils/utils.hpp ... VectorFile.cpp
Change VectorFile.cpp

Change VectorFile.cpp to reflect previous removal of utils/utils.hpp. Use
appropriate math/utils functions
Change functions to lower case

Just updating these three files to reflect new case rules being implemented
Merge pull request #71 from wilsonk/utils-cleanup

Utils.hpp cleanup
Distribute column over inputs uniformly in mapPotential
Remove old test
remove dependency on doxypy, fixes #78
Merge pull request #79 from utensil/78-remove-doxypy

Remove dependency on doxypy, fixes #78
Merge pull request #75 from chetan51/issue-73

Distribute column over inputs uniformly in mapPotential