Commit on 2014-11-14: Changes to fastq_barcode_splitter_cascade.pl. Need to verify barcodes from the generate_barcode_files.pl script. So going to test the cascade soon. Changes to the tassel and uneak analysis pipeline scripts. The tassel_analysis_pipeline.pl script is complete, but needs a few more useful features that I will add soon such as remapping the original reference genome sequence header information back to the SNP results. Changes to trim_adaptor_seq_fastq-new.pl. I added trim_offset_x to the filename where x equals the number of bps used for thr trimming offset parameter.
Merge branch 'master' of https://github.com/muirheadk/GBS_analysis_pipeline