Introduces meta analysis of interaction term to MetaQTL3
- Small fixes in the FDR counting of significant effects
- Adds another way of calculating the interaction model significance.
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
This updates the MixupMapper documentation
This introduces a beta version of MetaQTL4, which makes use of the GenotypeIO
Merge branch 'master' of https://github.com/harmjanwestra/systemsgenetics.git
Merge pull request #178 from harmjanwestra/master

Massive updates
Made final changes to analysis code for the Transcription Factor Enrichment (fixed enrichment direction), added some more methods to the EnrichmentReader and HistoneSiteEnrichment. Added new class to perform Enrichment on output for regressing out results.
- Throw exception for unexpected P-values
fix import
- Update ImputationTool documentation
- Add some functionality for genotype conversion in ImputationTool
- minor fixes
Merge pull request #179 from harmjanwestra/master

Minor updates + Docs
fixes
Merge pull request #181 from Bonder-MJ/master

fixes
editable genotype data
Merge branch 'master' of github.com:molgenis/systemsgenetics
Use trove to improve memory footprint of binary plink
fix comparator metatrait4. Should only be 0 is equals is true.
made members private
improved textfile reader